Occupancy models

occu()

Fit the MacKenzie et al. (2002) Occupancy Model

colext()

Fit the dynamic occupancy model of MacKenzie et. al (2003)

occuFP()

Fit occupancy models when false positive detections occur (e.g., Royle and Link [2006] and Miller et al. [2011])

occuMS()

Fit Single-Season and Dynamic Multi-State Occupancy Models

occuMulti()

Fit the Rota et al. (2016) Multi-species Occupancy Model

occuPEN()

Fit the MacKenzie et al. (2002) Occupancy Model with the penalized likelihood methods of Hutchinson et al. (2015)

occuTTD()

Fit Single-Season and Dynamic Time-to-detection Occupancy Models

Abundance models

occuRN()

Fit the occupancy model of Royle and Nichols (2003)

pcount()

Fit the N-mixture model of Royle (2004)

distsamp()

Fit the hierarchical distance sampling model of Royle et al. (2004)

multinomPois()

Multinomial-Poisson Mixtures Model

pcount.spHDS()

Fit spatial hierarchical distance sampling model.

gpcount()

Generalized binomial N-mixture model for repeated count data

gmultmix()

Generalized multinomial N-mixture model

gdistsamp()

Fit the generalized distance sampling model of Chandler et al. (2011).

gdistremoval()

Fit the combined distance and removal model of Amundson et al. (2014).

pcountOpen()

Fit the open N-mixture models of Dail and Madsen and extensions

distsampOpen()

Open population model for distance sampling data

multmixOpen()

Open population multinomial N-mixture model

nmixTTD()

Fit N-mixture Time-to-detection Models

Model diagnostics

fitted(<unmarkedFit>) fitted(<unmarkedFitColExt>) fitted(<unmarkedFitOccu>) fitted(<unmarkedFitOccuRN>) fitted(<unmarkedFitPCount>) fitted(<unmarkedFitDS>)

Methods for Function fitted in Package `unmarked'

parboot

Parametric bootstrap method for fitted models inheriting class.

nonparboot-methods

Nonparametric bootstrapping in unmarked

powerAnalysis()

Conduct a power analysis on an unmarked model

vif()

Compute Variance Inflation Factors for an unmarkedFit Object.

Model selection

fitList()

constructor of unmarkedFitList objects

modSel

Model selection results from an unmarkedFitList

crossVal(<unmarkedFit>) crossVal(<unmarkedFitList>)

Cross-validation methods for fitted unmarked models and fit lists

Model results

coef(<unmarkedFit>) coef(<unmarkedEstimate>) coef(<linCombOrBackTrans>)

Methods for Function coef in Package `unmarked'

predict-methods

Methods for Function predict in Package `unmarked'

linearComb-methods

Methods for Function linearComb in Package `unmarked'

backTransform(<unmarkedFit>) backTransform(<unmarkedEstimate>)

Methods for Function backTransform in Package `unmarked'

ranef-methods

Methods for Function ranef in Package unmarked

unmarkedRanef-class

Class "unmarkedRanef"

posteriorSamples(<unmarkedRanef>) posteriorSamples(<unmarkedFit>)

Draw samples from the posterior predictive distribution

unmarkedFit-class

Class "unmarkedFit"